Mapped reads for uncultivated Nitrosomonas bacterium UBA8836 genome r... - SRA

SRX3576380: Mapped reads for uncultivated Nitrosomonas bacterium UBA8836 genome recovered from SRX200676
1 ILLUMINA (Illumina HiSeq 2000) run: 1.6M spots, 297.6M bases, 100.8Mb downloads

Design: Reads from SRX200676 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA8836 genome.

Submitted by: University of Queensland

Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.

PRJNA417962 • SRP130174 • All experiments • All runs

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Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.

Sample: Uncultivated Nitrosomonas bacterium UBA8836 genome recovered from SRX200676

SAMN08018659 • SRS2846263 • All experiments • All runs

Organism: Nitrosomonas sp.

Library:

Name: UBA8836_library

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 1.6M spots, 297.6M bases, 100.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR6486517	1,568,043	297.6M	100.8Mb	2018-02-23

ID:: 4961882

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Sequence Read Archive

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